Genomics
9 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:CBG16150h.1 | CBG16150h.1 | [unknown] | |
| Transcript:CBG16150i.1 | CBG16150i.1 | [unknown] | |
| Transcript:CBG16150f.1 | CBG16150f.1 | [unknown] | |
| Transcript:CBG16150g.1 | CBG16150g.1 | [unknown] | |
| Transcript:CBG16150d.1 | CBG16150d.1 | [unknown] | |
| Transcript:CBG16150c.1 | CBG16150c.1 | [unknown] | |
| Transcript:CBG16150e.1 | CBG16150e.1 | [unknown] | |
| Transcript:CBG16150a.1 | CBG16150a.1 | [unknown] | |
| Transcript:CBG16150b.1 | CBG16150b.1 | [unknown] |
Other
9 CDSs
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| CDS:CBG16150h | CBG16150h | [unknown] | |
| CDS:CBG16150g | CBG16150g | [unknown] | |
| CDS:CBG16150i | CBG16150i | [unknown] | |
| CDS:CBG16150b | CBG16150b | [unknown] | |
| CDS:CBG16150a | CBG16150a | [unknown] | |
| CDS:CBG16150d | CBG16150d | [unknown] | |
| CDS:CBG16150c | CBG16150c | [unknown] | |
| CDS:CBG16150f | CBG16150f | [unknown] | |
| CDS:CBG16150e | CBG16150e | [unknown] |
23 Allele
| Public Name |
|---|
| WBVar00055289 |
| WBVar00055259 |
| WBVar00055254 |
| WBVar00055264 |
| WBVar00055249 |
| WBVar00055244 |
| WBVar00055279 |
| WBVar00055284 |
| WBVar00055269 |
| WBVar00055274 |
| WBVar00055214 |
| WBVar00055219 |
| WBVar00055239 |
| WBVar00055234 |
| WBVar00055224 |
| WBVar00055229 |
| WBVar00123630 |
| WBVar00023364 |
| WBVar00023369 |
| WBVar00023374 |
| WBVar00023379 |
| WBVar00020532 |
| WBVar00023384 |
3 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. | DESeq2, p < 0.01, fold change > 2. | WBPaper00068053:CBG_Day9_vs_Day6_upregulated | |
| Transcripts that showed significantly decreased expression in day 3 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. | DESeq2, p < 0.01, fold change > 2. | WBPaper00068053:CBG_Day3_vs_Day1_downregulated | |
| Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. | DESeq2, p < 0.01, fold change > 2. | WBPaper00068053:CBG_Day6_vs_Day1_downregulated |
2 Expression Patterns
| Remark | Reporter Gene | Primary Identifier | Pattern | Subcellular Localization |
|---|---|---|---|---|
| Cbr-pkc-2, GAAAATCTCAAGGGCGACGAGTTCATCAACTTCTCATTCGTCAATCCGTACTACGTCAAG, WBGene00036183 | Expr1060337 | Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012 | ||
| CBG16151, GAAGGCAAAAAAGCGCGAACCAATGGATAGTGCCGAGCGTCGACGATCCGAGACCGATAT, WBGene00036184 | Expr1059202 | Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012 |
