WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00036162 Gene Name  Cbr-gap-2
Sequence Name  ? CBG16118 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Ras GTPase-activating domain; Rho GTPase activation protein; Ras GTPase-activating protein; C2 domain superfamily; C2 domain; and GTPase-activator protein for Ras-like GTPase. Is an ortholog of C. elegans gap-2. In C. elegans, gap-2 is involved in learning or memory and negative regulation of Ras protein signal transduction. Biotype  SO:0001217
Genetic Position  :±
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

6 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG16118f.1 CBG16118f.1   [unknown]
Transcript:CBG16118d.1 CBG16118d.1   [unknown]
Transcript:CBG16118e.1 CBG16118e.1   [unknown]
Transcript:CBG16118b.1 CBG16118b.1   [unknown]
Transcript:CBG16118c.1 CBG16118c.1   [unknown]
Transcript:CBG16118a.1 CBG16118a.1   [unknown]
 

Other

6 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG16118d CBG16118d   [unknown]
CDS:CBG16118c CBG16118c   [unknown]
CDS:CBG16118f CBG16118f   [unknown]
CDS:CBG16118e CBG16118e   [unknown]
CDS:CBG16118b CBG16118b   [unknown]
CDS:CBG16118a CBG16118a   [unknown]

0 RNAi Result

232 Allele

Public Name
WBVar00135456
WBVar00138352
WBVar00138351
WBVar00138353
WBVar00047727
WBVar00048907
WBVar00048902
WBVar00048997
WBVar00048952
WBVar00048957
WBVar00048972
WBVar00048962
WBVar00048967
WBVar00048982
WBVar00048977
WBVar00048992
WBVar00048987
WBVar00048917
WBVar00048912
WBVar00048927
WBVar00048922
WBVar00048937
WBVar00048932
WBVar00048942
WBVar00048947
WBVar00048882
WBVar00048877
WBVar00048892
WBVar00048887
WBVar00048897

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

5 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG16128, ATACCAACCAAGGAGCGATTCTTCAGTATCTCCAGAATTCCTAGCCGTCTTACAAAGTTC, WBGene00036167   Expr1056224 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG16121, TTTCCGAATGCAACAAACCTACTACGCCTGCCGATCCCAGAACGAAAGAGCCAAATGGAT, WBGene00036163   Expr1052321 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG16122, CTATGTTATTGTTAATTCGTTATGGCAATTGCAGTTTCCGATTGTGCCACCAGCCAACAA, WBGene00036164   Expr1067300 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
Cbr-gap-2, GTTTCAGCATTCCAGCTGAGCCAAAGGAGATCGTTTATCAGAAGCGTGCCAGCCCACCAC, WBGene00036162   Expr1068888 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG16123, GTCATAATTTGTCGACTAGACTATCCGGATCGTCACAAAATTTGAATCAGGGACCAACGA, WBGene00036165   Expr1062270 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  involved_in

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region