WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00035657 Gene Name  Cbr-unc-75
Sequence Name  ? CBG15358 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable RNA binding activity. Is an ortholog of C. elegans unc-75. In C. elegans, unc-75 is involved in several processes, including cholinergic synaptic transmission; positive regulation of synaptic transmission; and regulation of alternative mRNA splicing, via spliceosome. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG15358.1 CBG15358.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG15358 CBG15358   [unknown]

0 RNAi Result

24 Allele

Public Name
WBVar00018512
WBVar00018507
WBVar00018502
WBVar00018517
WBVar00018492
WBVar00018497
WBVar00018482
WBVar00018487
WBVar00122333
WBVar00122332
WBVar00122334
WBVar00122331
WBVar00122330
WBVar00122322
WBVar00122321
WBVar00122324
WBVar00122323
WBVar00122326
WBVar00122325
WBVar00122328
WBVar00122327
WBVar00122329
WBVar00122320
WBVar00122319

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-unc-75, AACCGTCGAATGCAACAAATGGCCGCGCAAATGGGAATGTTGAATCCTCTACTGGTGAAT, WBGene00035657   Expr1063546 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  enables
  enables

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region