WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00035554 Gene Name  Cbr-ptl-1
Sequence Name  ? CBG15240 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable tubulin binding activity. Is an ortholog of C. elegans ptl-1. In C. elegans, ptl-1 is involved in microtubule polymerization and positive regulation of nematode male tail tip morphogenesis. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG15240a.1 CBG15240a.1   [unknown]
Transcript:CBG15240c.1 CBG15240c.1   [unknown]
Transcript:CBG15240b.1 CBG15240b.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG15240a CBG15240a   [unknown]
CDS:CBG15240b CBG15240b   [unknown]
CDS:CBG15240c CBG15240c   [unknown]

0 RNAi Result

12 Allele

Public Name
WBVar00122261
WBVar00122260
WBVar00122263
WBVar00122262
WBVar00122264
WBVar00122256
WBVar00122255
WBVar00122258
WBVar00122257
WBVar00122259
WBVar00122254
WBVar00122253

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-ptl-1, TGGAAAGCGGAGAGTAAAGTGGGATCCAAGGATAATATGAATCATCGACCAGGAGGTGGA, WBGene00035554   Expr1053725 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  enables

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region