WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00035469 Gene Name  Cbr-chin-1
Sequence Name  ? CBG15141 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable GTPase activator activity. Predicted to be involved in regulation of small GTPase mediated signal transduction and signal transduction. Is an ortholog of C. elegans chin-1. In C. elegans, chin-1 is involved in protein localization. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG15141.1 CBG15141.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG15141 CBG15141   [unknown]

0 RNAi Result

7 Allele

Public Name
WBVar00040169
WBVar00040179
WBVar00040174
WBVar00040184
WBVar00011889
WBVar00011884
WBVar00122210

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG15141, GATGGAGCTGTCAGATGCCAATATTATCACGCTTGGAGCGGTTTTGGCGCATTTGAAGAA, WBGene00035469   Expr1058784 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  involved_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region