WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00034975 Gene Name  Cbr-spat-3
Sequence Name  ? CBG14505 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be part of ubiquitin ligase complex. Is an ortholog of C. elegans spat-3. In C. elegans, spat-3 is involved in several processes, including negative regulation of gene expression, epigenetic; negative regulation of vulval development; and nematode male tail tip morphogenesis. Biotype  SO:0001217
Genetic Position  :±
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG14505a.1 CBG14505a.1   [unknown]
Transcript:CBG14505b.1 CBG14505b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG14505b CBG14505b   [unknown]
CDS:CBG14505a CBG14505a   [unknown]

0 RNAi Result

6 Allele

Public Name
WBVar00121441
WBVar00121440
WBVar00121436
WBVar00121437
WBVar00121438
WBVar00121439

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-spat-3, AGTTCCCACCAACTGACGAAAAAGCGTTCCTGTTGCACTTTGCTCAAGCACAAGCAGAGT, WBGene00034975   Expr1060020 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  part_of

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region