WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00034828 Gene Name  CBG14273
Sequence Name  ? CBG14273 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable ATP binding activity and protein kinase activity. Predicted to be involved in protein phosphorylation. Is an ortholog of C. elegans C01C4.3. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

6 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG14273d.2 CBG14273d.2   [unknown]
Transcript:CBG14273d.1 CBG14273d.1   [unknown]
Transcript:CBG14273e.1 CBG14273e.1   [unknown]
Transcript:CBG14273a.1 CBG14273a.1   [unknown]
Transcript:CBG14273b.1 CBG14273b.1   [unknown]
Transcript:CBG14273c.1 CBG14273c.1   [unknown]
 

Other

5 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG14273e CBG14273e   [unknown]
CDS:CBG14273c CBG14273c   [unknown]
CDS:CBG14273d CBG14273d   [unknown]
CDS:CBG14273a CBG14273a   [unknown]
CDS:CBG14273b CBG14273b   [unknown]

0 RNAi Result

6 Allele

Public Name
WBVar00002324
WBVar00002314
WBVar00002319
WBVar00029339
WBVar00029329
WBVar00029334

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG14272, CACACTGAGCACGCGTTCAACTCAACAATTCTTGGTTCCAAGTCCAGAAATGTCGTGCAA, WBGene00034827   Expr1059020 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG14273, AGCAGTGGCTGAAGAGGAAGAACCCAGCACTTCCAAAGAAGTTCAATCCTTTCTCTGAGA, WBGene00034828   Expr1057201 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region