WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00034598 Gene Name  CBG13918
Sequence Name  ? CBG13918 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be involved in apoptotic process. Is an ortholog of C. elegans Y77E11A.12. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG13918.1 CBG13918.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG13918 CBG13918   [unknown]

0 RNAi Result

23 Allele

Public Name
WBVar00016442
WBVar00016437
WBVar00016432
WBVar00016427
WBVar00016422
WBVar00016417
WBVar00016392
WBVar00016397
WBVar00016382
WBVar00016387
WBVar00016332
WBVar00016372
WBVar00016377
WBVar00016362
WBVar00016367
WBVar00016352
WBVar00016357
WBVar00016347
WBVar00016342
WBVar00016337
WBVar00016412
WBVar00016402
WBVar00016407

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG13919, TTGATATCGCCAAGTTGGCCCAGAAACTGTTAAGACTGGCTACGAATATTCTGGAGAAGC, WBGene00034599   Expr1062720 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG13918, TGAATTCTACAGGAAGACGTGAAACGAATCCATCGATTTTTGACGAACATTTAGTGGATG, WBGene00034598   Expr1068017 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  involved_in

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region