WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00034479 Gene Name  Cbr-fcd-2
Sequence Name  ? CBG13770 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be involved in DNA repair. Is an ortholog of C. elegans fcd-2. In C. elegans, fcd-2 is involved in nucleotide-excision repair and regulation of DNA-templated DNA replication. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG13770.1 CBG13770.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG13770 CBG13770   [unknown]

0 RNAi Result

26 Allele

Public Name
WBVar00046619
WBVar00017024
WBVar00017019
WBVar00017014
WBVar00017009
WBVar00017004
WBVar00017044
WBVar00017049
WBVar00017034
WBVar00017039
WBVar00017029
WBVar00120315
WBVar00120316
WBVar00120317
WBVar00120318
WBVar00120319
WBVar00120320
WBVar00120321
WBVar00120322
WBVar00120323
WBVar00120324
WBVar00016999
WBVar00016994
WBVar00016989
WBVar00016984
WBVar00016979

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in Cbr-spr-4(gu163) comparing to in AF16. DESeq2, FDR < 0.05. WBPaper00059178:Cbr-spr-4(gu163)_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-fcd-2, GAAGAGCAGATCCATCGACGGAGAGATTATCACGAATCAACCGGACAGTCCAATGGATTC, WBGene00034479   Expr1055675 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  involved_in

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region