WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00034421 Gene Name  Cbr-jac-1
Sequence Name  ? CBG13693 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be involved in cell-cell adhesion. Is an ortholog of C. elegans jac-1. In C. elegans, jac-1 is involved in embryonic body morphogenesis; regulation of actin cytoskeleton organization; and regulation of protein localization. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG13693b.1 CBG13693b.1   [unknown]
Transcript:CBG13693a.1 CBG13693a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG13693a CBG13693a   [unknown]
CDS:CBG13693b CBG13693b   [unknown]

0 RNAi Result

10 Allele

Public Name
WBVar00137818
WBVar00137817
WBVar00137819
WBVar00137821
WBVar00137820
WBVar00137823
WBVar00137822
WBVar00137825
WBVar00137824
WBVar00137826

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-jac-1, TGGCAACATAAGGAACTTCAAGATGGATTCAAGCGGTCCGGTCTCAAGGAAGCTGACTTT, WBGene00034421   Expr1051728 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  involved_in

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region