WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00034231 Gene Name  Cbr-hlh-1
Sequence Name  ? CBG13470 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable protein dimerization activity. Predicted to be involved in muscle organ development and regulation of DNA-templated transcription. Is an ortholog of C. elegans hlh-1. In C. elegans, hlh-1 is involved in positive regulation of mesodermal cell fate specification; positive regulation of transcription by RNA polymerase II; and striated muscle cell differentiation. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

6 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG13470b.1 CBG13470b.1   [unknown]
Transcript:CBG13470c.1 CBG13470c.1   [unknown]
Transcript:CBG13470d.1 CBG13470d.1   [unknown]
Transcript:CBG13470e.1 CBG13470e.1   [unknown]
Transcript:CBG13470f.1 CBG13470f.1   [unknown]
Transcript:CBG13470a.1 CBG13470a.1   [unknown]
 

Other

6 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG13470d CBG13470d   [unknown]
CDS:CBG13470c CBG13470c   [unknown]
CDS:CBG13470f CBG13470f   [unknown]
CDS:CBG13470e CBG13470e   [unknown]
CDS:CBG13470b CBG13470b   [unknown]
CDS:CBG13470a CBG13470a   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 3 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day3_vs_Day1_downregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-hlh-1, ATGGACCAGAACCATCATTTGCAAATGACACAACCGATTAGTGCCGCACCACATGATTAT, WBGene00034231   Expr1058468 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  involved_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region