WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00034112 Gene Name  Cbr-ire-1
Sequence Name  ? CBG13333 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable ATP binding activity; RNA nuclease activity; and protein kinase activity. Predicted to be involved in mRNA processing and protein phosphorylation. Is an ortholog of C. elegans ire-1. In C. elegans, ire-1 is involved in nematode larval development; positive regulation of transcription by RNA polymerase II; and response to stress. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG13333.1 CBG13333.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG13333 CBG13333   [unknown]

0 RNAi Result

12 Allele

Public Name
WBVar00043074
WBVar00043069
WBVar00043064
WBVar00014669
WBVar00014664
WBVar00014659
WBVar00014654
WBVar00064053
WBVar00064048
WBVar00064068
WBVar00064063
WBVar00064058

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-ire-1, GATGGATTGCTCCAGAAGTCCTTATTTCTGCCAGCACCTCTTATCCAGTTGATATCTTTT, WBGene00034112   Expr1063004 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG00749, AAAAACGTGGAATGCGACGTTCAACGACTACTCGGCTCATCTACTTCCAGAAGTCAATTC, WBGene00024092   Expr1053473 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

5 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in
  involved_in

0 Homologues

0 Locations

5 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region