WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00034094 Gene Name  CBG13315
Sequence Name  ? CBG13315 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable nucleic acid binding activity and poly(A)-specific ribonuclease activity. Predicted to be part of CCR4-NOT complex. Is an ortholog of C. elegans ccf-1. In C. elegans, ccf-1 is involved in nuclear-transcribed mRNA poly(A) tail shortening and oogenesis. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG13315.1 CBG13315.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG13315 CBG13315   [unknown]

0 RNAi Result

74 Allele

Public Name
WBVar00137685
WBVar00137687
WBVar00137686
WBVar00137689
WBVar00137688
WBVar00137690
WBVar00137691
WBVar00119561
WBVar00119562
WBVar00119560
WBVar00119569
WBVar00119567
WBVar00119568
WBVar00119565
WBVar00119566
WBVar00119563
WBVar00119564
WBVar00119509
WBVar00119507
WBVar00119508
WBVar00119505
WBVar00119506
WBVar00119514
WBVar00119515
WBVar00119512
WBVar00119513
WBVar00119510
WBVar00119511
WBVar00119503
WBVar00119504

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG13315, ATCAAGAAGCAGTTTTTCGGAGATAGCTGGAATCAAATTGCTCCTCTGATTTGCGGTCAC, WBGene00034094   Expr1051892 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  part_of
  enables
  enables

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  part_of
  enables
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region