WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00034087 Gene Name  Cbr-faah-5
Sequence Name  ? CBG13308 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable nucleic acid binding activity and tRNA-intron lyase activity. Predicted to be involved in tRNA splicing, via endonucleolytic cleavage and ligation. Is an ortholog of C. elegans faah-5. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG13308.1 CBG13308.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG13308 CBG13308   [unknown]

0 RNAi Result

9 Allele

Public Name
WBVar00119561
WBVar00119562
WBVar00119560
WBVar00119558
WBVar00119559
WBVar00119556
WBVar00119557
WBVar00119554
WBVar00119555

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_downregulated

0 Expression Patterns

3 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region