WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00033985 Gene Name  Cbr-cku-70
Sequence Name  ? CBG13185 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable DNA helicase activity; damaged DNA binding activity; and telomeric DNA binding activity. Predicted to be involved in double-strand break repair via nonhomologous end joining and telomere maintenance. Predicted to be located in nucleus. Predicted to be part of Ku70:Ku80 complex. Is an ortholog of C. elegans cku-70. In C. elegans, cku-70 is involved in DNA repair. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG13185.1 CBG13185.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG13185 CBG13185   [unknown]

0 RNAi Result

8 Allele

Public Name
WBVar00042094
WBVar00119385
WBVar00119386
WBVar00119384
WBVar00119387
WBVar00013489
WBVar00013494
WBVar00013484

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in Cbr-spr-4(gu163) comparing to in AF16. DESeq2, FDR < 0.05. WBPaper00059178:Cbr-spr-4(gu163)_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-cku-70, CAATGATCAAACCACATTGGGTAGTACCAATATGTATCGTACATTGTTGGATCGATGCTG, WBGene00033985   Expr1058858 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

8 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  enables
  involved_in
  involved_in
  located_in
  part_of

0 Homologues

0 Locations

8 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  enables
  involved_in
  involved_in
  located_in
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region