WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00033859 Gene Name  Cbr-pde-4
Sequence Name  ? CBG13017 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable 3',5'-cyclic-nucleotide phosphodiesterase activity. Predicted to be involved in signal transduction. Is an ortholog of C. elegans pde-4. In C. elegans, pde-4 is involved in several processes, including adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway; negative regulation of adenylate cyclase-activating G protein-coupled receptor signaling pathway; and sleep. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG13017a.1 CBG13017a.1   [unknown]
Transcript:CBG13017d.1 CBG13017d.1   [unknown]
Transcript:CBG13017b.1 CBG13017b.1   [unknown]
Transcript:CBG13017c.1 CBG13017c.1   [unknown]
 

Other

4 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG13017d CBG13017d   [unknown]
CDS:CBG13017c CBG13017c   [unknown]
CDS:CBG13017b CBG13017b   [unknown]
CDS:CBG13017a CBG13017a   [unknown]

0 RNAi Result

13 Allele

Public Name
WBVar00137674
WBVar00137673
WBVar00137676
WBVar00137675
WBVar00057994
WBVar00057999
WBVar00057984
WBVar00057989
WBVar00058004
WBVar00058009
WBVar00058014
WBVar00058019
WBVar00014897

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG13022, AAACAGTTCAAATTGAGACCATGGCAATCAACAGCACTTCCCGCCAGACACGACCACTAC, WBGene00033861   Expr1057278 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
Cbr-pde-4, CGGATACCCGAAGAACCGGAAACAGCACGCACGGTTACAGAAGACGATGAGCACAAATAG, WBGene00033859   Expr1057230 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region