WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00033787 Gene Name  Cbr-slo-1
Sequence Name  ? CBG12923 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable monoatomic ion channel activity. Predicted to be involved in potassium ion transport and transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans slo-1. In C. elegans, slo-1 is involved in several processes, including behavioral response to ethanol; nematode pharyngeal pumping; and sarcomere organization. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

8 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG12923h.1 CBG12923h.1   [unknown]
Transcript:CBG12923e.1 CBG12923e.1   [unknown]
Transcript:CBG12923d.1 CBG12923d.1   [unknown]
Transcript:CBG12923g.1 CBG12923g.1   [unknown]
Transcript:CBG12923f.1 CBG12923f.1   [unknown]
Transcript:CBG12923a.1 CBG12923a.1   [unknown]
Transcript:CBG12923c.1 CBG12923c.1   [unknown]
Transcript:CBG12923b.1 CBG12923b.1   [unknown]
 

Other

8 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG12923f CBG12923f   [unknown]
CDS:CBG12923e CBG12923e   [unknown]
CDS:CBG12923h CBG12923h   [unknown]
CDS:CBG12923g CBG12923g   [unknown]
CDS:CBG12923b CBG12923b   [unknown]
CDS:CBG12923a CBG12923a   [unknown]
CDS:CBG12923d CBG12923d   [unknown]
CDS:CBG12923c CBG12923c   [unknown]

0 RNAi Result

11 Allele

Public Name
WBVar00119165
WBVar00119166
WBVar00119163
WBVar00119164
WBVar00119161
WBVar00119162
WBVar00119160
WBVar00119169
WBVar00119167
WBVar00119168
WBVar00119159

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-slo-1, TTGTATTGGATTGTACAGGCTGCATGATCAAGACAATCCTGATTCCATGAAACGATATGT, WBGene00033787   Expr1053253 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

5 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  involved_in
  involved_in
  located_in

0 Homologues

0 Locations

5 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  involved_in
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region