WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00033613 Gene Name  Cbr-ckr-1
Sequence Name  ? CBG12702 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable G protein-coupled receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Is an ortholog of C. elegans ckr-1. In C. elegans, ckr-1 is involved in determination of adult lifespan. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG12702a.1 CBG12702a.1   [unknown]
Transcript:CBG12702b.1 CBG12702b.1   [unknown]
Transcript:CBG12702c.1 CBG12702c.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG12702a CBG12702a   [unknown]
CDS:CBG12702b CBG12702b   [unknown]
CDS:CBG12702c CBG12702c   [unknown]

0 RNAi Result

8 Allele

Public Name
WBVar00118787
WBVar00118786
WBVar00118789
WBVar00118788
WBVar00118783
WBVar00118785
WBVar00118784
WBVar00118790

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-ckr-1, ATGTCAGCTCATTGGCTAATCCAATCACCTACTGTTTCATGAACAAATCATTCCGATCGT, WBGene00033613   Expr1065942 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  located_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region