WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00033270 Gene Name  Cbr-nth-1
Sequence Name  ? CBG12304 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable DNA binding activity and catalytic activity. Predicted to be involved in base-excision repair. Is an ortholog of C. elegans nth-1. In C. elegans, nth-1 is involved in cellular response to hydrogen peroxide and depyrimidination. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG12304.1 CBG12304.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG12304 CBG12304   [unknown]

0 RNAi Result

7 Allele

Public Name
WBVar00039249
WBVar00039224
WBVar00039229
WBVar00039234
WBVar00039239
WBVar00039244
WBVar00118455

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-nth-1, TTGCCGGCTCACTTGTCCCAGTTCGACAGCGAAAACCGGCGAAAAAGTGGAAAAATTGGC, WBGene00033270   Expr1067200 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

4 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in
  involved_in

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region