WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00033222 Gene Name  Cbr-ncl-1
Sequence Name  ? CBG12245 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable zinc ion binding activity. Is an ortholog of C. elegans ncl-1. In C. elegans, ncl-1 is involved in several processes, including negative regulation of DNA-templated transcription; negative regulation of ribosome biogenesis; and nucleologenesis. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG12245.1 CBG12245.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG12245 CBG12245   [unknown]

0 RNAi Result

18 Allele

Public Name
WBVar00038839
WBVar00038834
WBVar00038849
WBVar00038844
WBVar00038859
WBVar00038854
WBVar00118402
WBVar00118401
WBVar00118404
WBVar00118403
WBVar00118400
WBVar00118406
WBVar00118405
WBVar00118408
WBVar00118407
WBVar00118398
WBVar00118397
WBVar00118399

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-ncl-1, GACAATCGTGCTCACTGCATCAAGGTGTTCTCCTACGAGGGACAATATTTGCGTCAAATT, WBGene00033222   Expr1060987 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  enables
  enables

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region