WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00033136 Gene Name  Cbr-tnt-4
Sequence Name  ? CBG12139 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be involved in regulation of muscle contraction. Predicted to be part of troponin complex. Is an ortholog of C. elegans tnt-4. In C. elegans, tnt-4 is involved in several processes, including nematode larval development; nematode pharyngeal gland morphogenesis; and nematode pharynx development. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG12139b.1 CBG12139b.1   [unknown]
Transcript:CBG12139a.1 CBG12139a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG12139a CBG12139a   [unknown]
CDS:CBG12139b CBG12139b   [unknown]

0 RNAi Result

15 Allele

Public Name
WBVar00118262
WBVar00118261
WBVar00118264
WBVar00118263
WBVar00118269
WBVar00118266
WBVar00118265
WBVar00118268
WBVar00118267
WBVar00118273
WBVar00118272
WBVar00118275
WBVar00118274
WBVar00118271
WBVar00118270

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 3 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day3_vs_Day1_downregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated
  Transcripts that showed significantly increased expression in Cbr-spr-4(gu163) comparing to in AF16. DESeq2, FDR < 0.05. WBPaper00059178:Cbr-spr-4(gu163)_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-tnt-4, TCATCAAGAAGTTGGATTACGAAATCCAACAGGAACTTGAGGCCGCCGAGGAAGAGGAAG, WBGene00033136   Expr1054114 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  involved_in
  part_of

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region