WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00033078 Gene Name  Cbr-unc-89
Sequence Name  ? CBG12070 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable ATP binding activity; guanyl-nucleotide exchange factor activity; and protein kinase activity. Predicted to be involved in protein phosphorylation. Is an ortholog of C. elegans unc-89. In C. elegans, unc-89 is involved in several processes, including myofibril assembly; nematode pharyngeal gland morphogenesis; and regulation of striated muscle contraction. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

7 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG12070b.1 CBG12070b.1   [unknown]
Transcript:CBG12070b.2 CBG12070b.2   [unknown]
Transcript:CBG12070a.1 CBG12070a.1   [unknown]
Transcript:CBG12070d.1 CBG12070d.1   [unknown]
Transcript:CBG12070c.1 CBG12070c.1   [unknown]
Transcript:CBG12070f.1 CBG12070f.1   [unknown]
Transcript:CBG12070e.1 CBG12070e.1   [unknown]
 

Other

6 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG12070a CBG12070a   [unknown]
CDS:CBG12070c CBG12070c   [unknown]
CDS:CBG12070b CBG12070b   [unknown]
CDS:CBG12070e CBG12070e   [unknown]
CDS:CBG12070d CBG12070d   [unknown]
CDS:CBG12070f CBG12070f   [unknown]

0 RNAi Result

20 Allele

Public Name
WBVar00118229
WBVar00118231
WBVar00118230
WBVar00118232
WBVar00118219
WBVar00118218
WBVar00118220
WBVar00118226
WBVar00118225
WBVar00118228
WBVar00118227
WBVar00118222
WBVar00118221
WBVar00118224
WBVar00118223
WBVar00118215
WBVar00118214
WBVar00118217
WBVar00118216
WBVar00118213

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day1_upregulated

3 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG26591, ATATCCATAACTCTTTGGATCATCCAGGAATCGTTCAAATGCATCGAGTGCTCAGAGATG, WBGene00088005   Expr1069038 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
Cbr-unc-89, TCAGCAAGGAGAACGTTGGACAATATCAGTGCTTCGCTAAGAATGAATACGGAGACGCTC, WBGene00033078   Expr1055828 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG12069, TCGAGACTCCGAAAACTCGCTGCAATGACCCGCCAACACCAATCCACACGGCCAATCAGC, WBGene00033077   Expr1054339 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

4 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region