WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00032850 Gene Name  Cbr-pph-4.1
Sequence Name  ? CBG11776 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable hydrolase activity. Is an ortholog of C. elegans pph-4.1. In C. elegans, pph-4.1 is involved in chiasma assembly; embryo development; and regulation of meiotic DNA double-strand break formation involved in reciprocal meiotic recombination. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG11776.1 CBG11776.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG11776 CBG11776   [unknown]

0 RNAi Result

18 Allele

Public Name
WBVar00043602
WBVar00043607
WBVar00043597
WBVar00013817
WBVar00013812
WBVar00013807
WBVar00013802
WBVar00013852
WBVar00013847
WBVar00013842
WBVar00013837
WBVar00013832
WBVar00013827
WBVar00013822
WBVar00013797
WBVar00013787
WBVar00013792
WBVar00013782

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-pph-4.1, GCGCCGCAGGAGAATCGTGGAGCACCCGCCAAGAAGCCACATGCCGATTATTTCCTTTAA, WBGene00032850   Expr1054253 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  enables

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region