WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00032829 Gene Name  Cbr-tat-1
Sequence Name  ? CBG11754 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable ATP hydrolysis activity; ATPase-coupled intramembrane lipid transporter activity; and small molecule binding activity. Predicted to be involved in phospholipid transport. Predicted to be located in membrane. Is an ortholog of C. elegans tat-1. In C. elegans, tat-1 is involved in several processes, including lysosome organization; phospholipid translocation; and regulation of phagocytosis, engulfment. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG11754b.1 CBG11754b.1   [unknown]
Transcript:CBG11754c.1 CBG11754c.1   [unknown]
Transcript:CBG11754a.1 CBG11754a.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG11754b CBG11754b   [unknown]
CDS:CBG11754c CBG11754c   [unknown]
CDS:CBG11754a CBG11754a   [unknown]

0 RNAi Result

41 Allele

Public Name
WBVar00043612
WBVar00117607
WBVar00117606
WBVar00117609
WBVar00117608
WBVar00117603
WBVar00117602
WBVar00117605
WBVar00117604
WBVar00117610
WBVar00117612
WBVar00117611
WBVar00117601
WBVar00117600
WBVar00117618
WBVar00117617
WBVar00117619
WBVar00117614
WBVar00117613
WBVar00117616
WBVar00117615
WBVar00117621
WBVar00117620
WBVar00117622
WBVar00013737
WBVar00013732
WBVar00013727
WBVar00013722
WBVar00013717
WBVar00013712

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-tat-1, TGATCAGATTATGAAGTATCCCGCGTTGTATGCCAGCTTCCAGAACAGAGCATTTAGTAT, WBGene00032829   Expr1056136 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

8 GO Annotation

Annotation Extension Qualifier
  involved_in
  located_in
  enables
  enables
  enables
  enables
  enables
  enables

0 Homologues

0 Locations

8 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  located_in
  enables
  enables
  enables
  enables
  enables
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region