WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00032816 Gene Name  CBG11739
Sequence Name  ? CBG11739 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in protein dephosphorylation. Is an ortholog of C. elegans R06B10.2. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG11739.1 CBG11739.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG11739 CBG11739   [unknown]

0 RNAi Result

19 Allele

Public Name
WBVar00117508
WBVar00117507
WBVar00117509
WBVar00117504
WBVar00117503
WBVar00117506
WBVar00117505
WBVar00117511
WBVar00117510
WBVar00117513
WBVar00117512
WBVar00117502
WBVar00117501
WBVar00117518
WBVar00117515
WBVar00117514
WBVar00117517
WBVar00117516
WBVar00013642

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in day 9 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day1_downregulated
  Transcripts that showed significantly decreased expression in day 3 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day3_vs_Day1_downregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated
  Transcripts that showed significantly increased expression in Cbr-spr-4(gu163) comparing to in AF16. DESeq2, FDR < 0.05. WBPaper00059178:Cbr-spr-4(gu163)_upregulated

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG11738, TTGGAATTCAAAACAAAACTCGATTCGCTGGATTCTATGGGTCTGGACTATGATAGCCAC, WBGene00032815   Expr1051250 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG11739, GCGAGAAAGAAACTAAGGGACGCGGCGGAAGCGGCAAGAAGGGCTACGGATGATCGATAT, WBGene00032816   Expr1051676 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region