WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00032754 Gene Name  Cbr-tat-2
Sequence Name  ? CBG11664 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable ATP hydrolysis activity; ATPase-coupled intramembrane lipid transporter activity; and small molecule binding activity. Predicted to be involved in phospholipid transport. Predicted to be located in membrane. Is an ortholog of C. elegans tat-2. In C. elegans, tat-2 is involved in sterol metabolic process. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG11664b.1 CBG11664b.1   [unknown]
Transcript:CBG11664a.1 CBG11664a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG11664a CBG11664a   [unknown]
CDS:CBG11664b CBG11664b   [unknown]

0 RNAi Result

32 Allele

Public Name
WBVar00137535
WBVar00137534
WBVar00137537
WBVar00137536
WBVar00137539
WBVar00137538
WBVar00137540
WBVar00137541
WBVar00137522
WBVar00137521
WBVar00137524
WBVar00137523
WBVar00137526
WBVar00137525
WBVar00137528
WBVar00137527
WBVar00137529
WBVar00137531
WBVar00137530
WBVar00137533
WBVar00137532
WBVar00013457
WBVar00013447
WBVar00013452
WBVar00013437
WBVar00013432
WBVar00013442
WBVar00013427
WBVar00013422
WBVar00013417

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-tat-2, GCTACGCGTTCTCACATTCGCAAGGATTCGGAGAGCTCATTCTCAAAGGAAAACTGTTCA, WBGene00032754   Expr1068948 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

8 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  enables
  enables
  enables
  involved_in
  located_in

0 Homologues

0 Locations

8 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  enables
  enables
  enables
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region