WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00032278 Gene Name  Cbr-nurf-1
Sequence Name  ? CBG11092 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be part of NURF complex. Is an ortholog of C. elegans nurf-1. In C. elegans, nurf-1 is involved in positive regulation of transcription by RNA polymerase II. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

8 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG11092f.1 CBG11092f.1   [unknown]
Transcript:CBG11092g.1 CBG11092g.1   [unknown]
Transcript:CBG11092h.1 CBG11092h.1   [unknown]
Transcript:CBG11092b.1 CBG11092b.1   [unknown]
Transcript:CBG11092c.1 CBG11092c.1   [unknown]
Transcript:CBG11092d.1 CBG11092d.1   [unknown]
Transcript:CBG11092e.1 CBG11092e.1   [unknown]
Transcript:CBG11092a.1 CBG11092a.1   [unknown]
 

Other

8 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG11092d CBG11092d   [unknown]
CDS:CBG11092c CBG11092c   [unknown]
CDS:CBG11092b CBG11092b   [unknown]
CDS:CBG11092a CBG11092a   [unknown]
CDS:CBG11092h CBG11092h   [unknown]
CDS:CBG11092g CBG11092g   [unknown]
CDS:CBG11092f CBG11092f   [unknown]
CDS:CBG11092e CBG11092e   [unknown]

0 RNAi Result

12 Allele

Public Name
WBVar00116517
WBVar00116518
WBVar00116519
WBVar00116513
WBVar00116514
WBVar00116515
WBVar00116516
WBVar00116520
WBVar00116509
WBVar00116510
WBVar00116511
WBVar00116512

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 3 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day3_vs_Day1_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-nurf-1, CTCCCCATCCAAAAAGTGTTATTCACCATCGTGTAGAGCTCAGCGAAATCCCAATTGCTA, WBGene00032278   Expr1065084 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  involved_in
  part_of

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region