WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00031973 Gene Name  Cbr-frpr-17
Sequence Name  ? CBG10659 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable G protein-coupled receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Is an ortholog of C. elegans frpr-17. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

6 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG10659a.1 CBG10659a.1   [unknown]
Transcript:CBG10659a.2 CBG10659a.2   [unknown]
Transcript:CBG10659c.1 CBG10659c.1   [unknown]
Transcript:CBG10659b.1 CBG10659b.1   [unknown]
Transcript:CBG10659d.1 CBG10659d.1   [unknown]
Transcript:CBG10659d.2 CBG10659d.2   [unknown]
 

Other

4 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG10659b CBG10659b   [unknown]
CDS:CBG10659a CBG10659a   [unknown]
CDS:CBG10659d CBG10659d   [unknown]
CDS:CBG10659c CBG10659c   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG10659, GAAGCCGAAAACAGAGAGCCCCGGACCCGGACCACCAATCATGATAACTGAAAAACCATC, WBGene00031973   Expr1059569 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  located_in
  enables
  involved_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  located_in
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region