WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00031970 Gene Name  Cbr-irk-3
Sequence Name  ? CBG10649 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable inward rectifier potassium channel activity. Predicted to be involved in potassium ion transport. Predicted to be located in membrane. Is an ortholog of C. elegans irk-3. In C. elegans, irk-3 is involved in short-term memory. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG10649a.1 CBG10649a.1   [unknown]
Transcript:CBG10649b.1 CBG10649b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG10649b CBG10649b   [unknown]
CDS:CBG10649a CBG10649a   [unknown]

0 RNAi Result

6 Allele

Public Name
WBVar00031474
WBVar00031479
WBVar00031484
WBVar00031489
WBVar00031494
WBVar00116027

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-irk-3, ACCAATGGTACTAATGAACGAAAAACTTTCGAAATATGAGGTTCACTACTCACTTTTTGA, WBGene00031970   Expr1052742 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  located_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region