WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00031903 Gene Name  Cbr-sprr-3
Sequence Name  ? CBG10533 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable G protein-coupled peptide receptor activity. Is an ortholog of C. elegans sprr-3. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG10533.2 CBG10533.2   [unknown]
Transcript:CBG10533.1 CBG10533.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG10533 CBG10533   [unknown]

0 RNAi Result

6 Allele

Public Name
WBVar00115901
WBVar00115902
WBVar00115900
WBVar00115897
WBVar00115898
WBVar00115899

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_upregulated

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-sprr-3, ATCAGAGACGTGGAATGTCTGTCGATTTCAAATGCTCTTTCGATTTGGAGCACCAAAGAA, WBGene00031903   Expr1060912 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG26528, CCAAATGCAATTCCAGCTGTTAACTGCTCGGATCTCATACATACCGTATACGATGGATAT, WBGene00087942   Expr1063400 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  enables

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region