WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00031452 Gene Name  Cbr-gpdh-2
Sequence Name  ? CBG09958 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable NAD binding activity; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; and protein homodimerization activity. Predicted to be involved in carbohydrate metabolic process and glycerol-3-phosphate catabolic process. Is an ortholog of C. elegans gpdh-2. In C. elegans, gpdh-2 is involved in intracellular accumulation of glycerol. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG09958c.1 CBG09958c.1   [unknown]
Transcript:CBG09958b.1 CBG09958b.1   [unknown]
Transcript:CBG09958a.1 CBG09958a.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG09958a CBG09958a   [unknown]
CDS:CBG09958b CBG09958b   [unknown]
CDS:CBG09958c CBG09958c   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  C.briggsae proteins that showed significantly increased at L4 larva stage than in emrbyo. Benjamin and Hochberg corrected p-value < 0.05. WBPaper00051425:CB_L4_vs_embryo_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-gpdh-2, AAGGAAATCCTCAAAATCGAAGTCAGTGTGTTGATGGGCGCGAATCTCGCTCCAGAAGTC, WBGene00031452   Expr1057364 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

6 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in
  involved_in
  involved_in

0 Homologues

0 Locations

6 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in
  involved_in
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region