WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00031288 Gene Name  Cbr-ptp-1
Sequence Name  ? CBG09764 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable cytoskeletal protein binding activity and protein tyrosine phosphatase activity. Predicted to be involved in protein dephosphorylation. Is an ortholog of C. elegans ptp-1. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG09764a.1 CBG09764a.1   [unknown]
Transcript:CBG09764b.1 CBG09764b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG09764b CBG09764b   [unknown]
CDS:CBG09764a CBG09764a   [unknown]

0 RNAi Result

18 Allele

Public Name
WBVar00115211
WBVar00115212
WBVar00115213
WBVar00115214
WBVar00115226
WBVar00115227
WBVar00115228
WBVar00115219
WBVar00115215
WBVar00115216
WBVar00115217
WBVar00115218
WBVar00115222
WBVar00115223
WBVar00115224
WBVar00115225
WBVar00115220
WBVar00115221

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-ptp-1, CTTATGATGATACTCGAGTGATACTTCAAACATCTGGATCTGGAGATTATATCAATGCTA, WBGene00031288   Expr1069687 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG09765, GTCAATGTATGGACAGCTACATTGGCCACATGTCAGGAACGAGAGGATTTCGATGAGAAA, WBGene00031289   Expr1069721 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region