WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00031056 Gene Name  Cbr-shw-3
Sequence Name  ? CBG09488 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable voltage-gated potassium channel activity. Predicted to be involved in potassium ion transport; protein homooligomerization; and transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Is an ortholog of C. elegans shw-3. In C. elegans, shw-3 is involved in potassium ion transport. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG09488b.1 CBG09488b.1   [unknown]
Transcript:CBG09488a.1 CBG09488a.1   [unknown]
Transcript:CBG09488d.1 CBG09488d.1   [unknown]
Transcript:CBG09488c.1 CBG09488c.1   [unknown]
 

Other

4 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG09488c CBG09488c   [unknown]
CDS:CBG09488d CBG09488d   [unknown]
CDS:CBG09488a CBG09488a   [unknown]
CDS:CBG09488b CBG09488b   [unknown]

0 RNAi Result

1 Allele

Public Name
WBVar00011052

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-shw-3, ATTCCAGAGTTACAGCTATTCGGAAACTTTTCTCGCAATCATCGAAGTATTTCTTCACGA, WBGene00031056   Expr1070087 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

8 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in
  involved_in
  involved_in
  involved_in
  located_in
  part_of

0 Homologues

0 Locations

8 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in
  involved_in
  involved_in
  involved_in
  located_in
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region