WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00031034 Gene Name  Cbr-unc-44
Sequence Name  ? CBG09456 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be involved in signal transduction. Is an ortholog of C. elegans unc-44. In C. elegans, unc-44 is involved in several processes, including axon guidance; establishment or maintenance of cytoskeleton polarity; and regulation of cellular component organization. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG09456.1 CBG09456.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG09456 CBG09456   [unknown]

0 RNAi Result

36 Allele

Public Name
WBVar00137081
WBVar00137080
WBVar00137083
WBVar00137082
WBVar00137085
WBVar00137084
WBVar00137087
WBVar00137086
WBVar00137089
WBVar00137088
WBVar00137090
WBVar00137092
WBVar00137091
WBVar00137094
WBVar00137093
WBVar00137096
WBVar00137095
WBVar00137079
WBVar00043769
WBVar00043774
WBVar00114900
WBVar00114901
WBVar00114902
WBVar00114903
WBVar00114904
WBVar00114905
WBVar00114906
WBVar00114907
WBVar00014779
WBVar00014774

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated
  C.briggsae proteins that showed significantly increased at L4 larva stage than in emrbyo. Benjamin and Hochberg corrected p-value < 0.05. WBPaper00051425:CB_L4_vs_embryo_upregulated
  C.briggsae proteins that showed significantly increased at L1 larva stage than in emrbyo. Benjamin and Hochberg corrected p-value < 0.05. WBPaper00051425:CB_L1_vs_embryo_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG09456, CTCGGTTCCCCAACAGCAAGATCAGAAGAACCAGAAGAACGGAAACATCCTGACGATCAT, WBGene00031034   Expr1055451 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  involved_in

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region