Genomics
4 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:CBG09247b.1 | CBG09247b.1 | [unknown] | |
| Transcript:CBG09247c.1 | CBG09247c.1 | [unknown] | |
| Transcript:CBG09247d.1 | CBG09247d.1 | [unknown] | |
| Transcript:CBG09247a.1 | CBG09247a.1 | [unknown] |
Other
4 CDSs
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| CDS:CBG09247c | CBG09247c | [unknown] | |
| CDS:CBG09247b | CBG09247b | [unknown] | |
| CDS:CBG09247a | CBG09247a | [unknown] | |
| CDS:CBG09247d | CBG09247d | [unknown] |
41 Allele
| Public Name |
|---|
| WBVar00046462 |
| WBVar00046457 |
| WBVar00046472 |
| WBVar00046467 |
| WBVar00046482 |
| WBVar00046477 |
| WBVar00046442 |
| WBVar00046452 |
| WBVar00046447 |
| WBVar00114712 |
| WBVar00114711 |
| WBVar00114710 |
| WBVar00114716 |
| WBVar00114715 |
| WBVar00114714 |
| WBVar00114713 |
| WBVar00114717 |
| WBVar00114701 |
| WBVar00114700 |
| WBVar00114705 |
| WBVar00114704 |
| WBVar00114703 |
| WBVar00114702 |
| WBVar00114709 |
| WBVar00114708 |
| WBVar00114707 |
| WBVar00114706 |
| WBVar00114686 |
| WBVar00114699 |
| WBVar00114698 |
3 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. | DESeq2, p < 0.01, fold change > 2. | WBPaper00068053:CBG_Day9_vs_Day6_upregulated | |
| Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. | DESeq2, p < 0.01, fold change > 2. | WBPaper00068053:CBG_Day6_vs_Day1_downregulated | |
| Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 3 adults of AF16. | DESeq2, p < 0.01, fold change > 2. | WBPaper00068053:CBG_Day6_vs_Day3_downregulated |
6 Expression Patterns
| Remark | Reporter Gene | Primary Identifier | Pattern | Subcellular Localization |
|---|---|---|---|---|
| CBG18884, CTACACTAATCGAAGATGAAGGAGAATACTGCTGTACTGCAAGCAACGTAGCCGGAACTG, WBGene00038196 | Expr1070165 | Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012 | ||
| Cbr-ttn-1, CAATGATTCTATCCGAAGGTAAGATTACTGTATGTTCTCTAGGAATATCTGTGTATCGTC, WBGene00030865 | Expr1059853 | Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012 | ||
| CBG09238, TCAGCGAAGATTTGAGCGTTGATTCAAGCGCAGATTTCACAGTGGTGCAGGACAAAGCTG, WBGene00030862 | Expr1061494 | Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012 | ||
| CBG27130, GTCGACCACAACCAGAAGTGATCTGGATCGATAACAATGGAAAGGTTATTGAGGAATCCA, WBGene00088544 | Expr1063394 | Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012 | ||
| CBG09244, AAAAAGACAGTGGATTGAGAATGTATCTGGAGTTAGTTCGTTGACGATTGGAGAGATGAG, WBGene00030863 | Expr1050250 | Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012 | ||
| CBG18883, GAATCACAATCGATGGCTCAGTTTCTACGTTACAGCTTAGAACCGAAGTGATTGGAACTC, WBGene00038195 | Expr1066392 | Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012 |
