WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00030796 Gene Name  Cbr-cup-5
Sequence Name  ? CBG09148 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable monoatomic cation channel activity. Is an ortholog of C. elegans cup-5. In C. elegans, cup-5 is involved in several processes, including cuticle development involved in collagen and cuticulin-based cuticle molting cycle; determination of adult lifespan; and lysosomal lumen acidification. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG09148.1 CBG09148.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG09148 CBG09148   [unknown]

0 RNAi Result

17 Allele

Public Name
WBVar00114556
WBVar00114555
WBVar00114554
WBVar00114553
WBVar00056744
WBVar00025434
WBVar00025469
WBVar00025439
WBVar00025474
WBVar00025444
WBVar00025479
WBVar00025449
WBVar00025484
WBVar00025454
WBVar00025459
WBVar00025429
WBVar00025464

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 3 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day3_vs_Day1_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-cup-5, CATCTATGTAGTACTATCACTGTTCATTGCTATCATCATGGACGCCTATGAAGTTGTCAA, WBGene00030796   Expr1067629 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  enables

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region