WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00030747 Gene Name  Cbr-polq-1
Sequence Name  ? CBG09083 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable ATP binding activity; DNA binding activity; and DNA-directed DNA polymerase activity. Predicted to be involved in DNA-templated DNA replication. Is an ortholog of C. elegans polq-1. In C. elegans, polq-1 is involved in base-excision repair, gap-filling and cellular response to ionizing radiation. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG09083.1 CBG09083.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG09083 CBG09083   [unknown]

0 RNAi Result

31 Allele

Public Name
WBVar00137021
WBVar00137023
WBVar00137022
WBVar00137025
WBVar00137024
WBVar00137026
WBVar00114392
WBVar00114391
WBVar00114390
WBVar00114395
WBVar00114394
WBVar00114393
WBVar00114379
WBVar00114381
WBVar00114380
WBVar00114385
WBVar00114384
WBVar00114383
WBVar00114382
WBVar00114389
WBVar00114388
WBVar00114387
WBVar00114386
WBVar00114374
WBVar00114373
WBVar00114372
WBVar00114378
WBVar00114377
WBVar00114376
WBVar00114375

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 3 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day3_vs_Day1_upregulated
  Transcripts that showed significantly increased expression in Cbr-spr-4(gu163) comparing to in AF16. DESeq2, FDR < 0.05. WBPaper00059178:Cbr-spr-4(gu163)_upregulated

3 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG09084, GATTCTTCTCAGCTCTGGCGTTGTTTGATTTGATCAATGAAATGAGTATATATCAGGTGA, WBGene00030748   Expr1060449 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
Cbr-polq-1, CATTCATTGTCGCATGGAAATGTGCACAGCTACTGGAAGAATGTTGACCAGTAGCCCTAA, WBGene00030747   Expr1064395 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG09086, ATCATGCTGGATTGACGATGGAAGAGAGAGAATGCATTGAAATGGGATTTCGAGAGAAGA, WBGene00030750   Expr1064551 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

6 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  enables
  involved_in
  involved_in

0 Homologues

0 Locations

6 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  enables
  involved_in
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region