WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00030493 Gene Name  Cbr-ekl-4
Sequence Name  ? CBG08755 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be involved in DNA repair; chromatin remodeling; and negative regulation of DNA-templated transcription. Predicted to be located in nucleus. Predicted to be part of NuA4 histone acetyltransferase complex. Is an ortholog of C. elegans ekl-4. In C. elegans, ekl-4 is involved in negative regulation of cell fate specification. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG08755.1 CBG08755.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG08755 CBG08755   [unknown]

0 RNAi Result

10 Allele

Public Name
WBVar00113975
WBVar00113974
WBVar00113973
WBVar00113976
WBVar00010267
WBVar00010257
WBVar00010262
WBVar00010247
WBVar00010252
WBVar00019264

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-ekl-4, GGCTTCCACCGCTCGAAGAATAACTTCCTGGATTGATTGTTCTAGTTCCAAAGAAATTTC, WBGene00030493   Expr1070256 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

5 GO Annotation

Annotation Extension Qualifier
  located_in
  part_of
  involved_in
  involved_in
  involved_in

0 Homologues

0 Locations

5 Ontology Annotations

Annotation Extension Qualifier
  located_in
  part_of
  involved_in
  involved_in
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region