WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00030453 Gene Name  Cbr-dlk-1
Sequence Name  ? CBG08707 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable ATP binding activity and protein kinase activity. Predicted to be involved in protein phosphorylation. Is an ortholog of C. elegans dlk-1. In C. elegans, dlk-1 is involved in several processes, including p38MAPK cascade; regulation of axon extension; and sprouting of injured axon. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG08707a.1 CBG08707a.1   [unknown]
Transcript:CBG08707c.1 CBG08707c.1   [unknown]
Transcript:CBG08707b.1 CBG08707b.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG08707a CBG08707a   [unknown]
CDS:CBG08707c CBG08707c   [unknown]
CDS:CBG08707b CBG08707b   [unknown]

0 RNAi Result

13 Allele

Public Name
WBVar00113942
WBVar00113941
WBVar00113940
WBVar00113946
WBVar00113945
WBVar00113944
WBVar00113943
WBVar00113935
WBVar00113933
WBVar00113939
WBVar00113938
WBVar00113937
WBVar00113936

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-dlk-1, ATCATTCATCAACGTATTGAAGAATATTCGTCGTCTGCCACAGAAGATAGTGATGACGCT, WBGene00030453   Expr1054282 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region