WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00030276 Gene Name  Cbr-smg-2
Sequence Name  ? CBG08494 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable RNA binding activity; RNA helicase activity; and small molecule binding activity. Predicted to be involved in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay. Predicted to be located in cytoplasm. Is an ortholog of C. elegans smg-2. In C. elegans, smg-2 is involved in embryonic genitalia morphogenesis and negative regulation of gene expression. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG08494a.1 CBG08494a.1   [unknown]
Transcript:CBG08494b.1 CBG08494b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG08494a CBG08494a   [unknown]
CDS:CBG08494b CBG08494b   [unknown]

0 RNAi Result

3 Allele

Public Name
WBVar00113634
WBVar00113633
WBVar00113632

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in Cbr-htz-1(gu167) comparing to in AF16. DESeq2, FDR < 0.05. WBPaper00059178:Cbr-htz-1(gu167)_upregulated

0 Expression Patterns

7 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  enables
  enables
  involved_in
  located_in

0 Homologues

0 Locations

7 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  enables
  enables
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region