WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00030199 Gene Name  Cbr-egl-4
Sequence Name  ? CBG08401 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable ATP binding activity and cGMP-dependent protein kinase activity. Predicted to be involved in protein phosphorylation. Is an ortholog of C. elegans egl-4. In C. elegans, egl-4 is involved in several processes, including enzyme-linked receptor protein signaling pathway; regulation of multicellular organismal process; and regulation of signal transduction. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG08401a.1 CBG08401a.1   [unknown]
Transcript:CBG08401b.1 CBG08401b.1   [unknown]
Transcript:CBG08401c.1 CBG08401c.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG08401c CBG08401c   [unknown]
CDS:CBG08401a CBG08401a   [unknown]
CDS:CBG08401b CBG08401b   [unknown]

0 RNAi Result

8 Allele

Public Name
WBVar00136880
WBVar00136882
WBVar00136881
WBVar00136884
WBVar00136883
WBVar00136886
WBVar00136885
WBVar00136887

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  C.briggsae proteins that showed significantly increased at L4 larva stage than in emrbyo. Benjamin and Hochberg corrected p-value < 0.05. WBPaper00051425:CB_L4_vs_embryo_upregulated
  C.briggsae proteins that showed significantly increased at L1 larva stage than in emrbyo. Benjamin and Hochberg corrected p-value < 0.05. WBPaper00051425:CB_L1_vs_embryo_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-egl-4, GTACACGTTGATTCTGAAGGGAGTCGACGCGTTAGAGATTCCGAATCGACGAATTGGAAA, WBGene00030199   Expr1067897 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

5 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  enables
  involved_in

0 Homologues

0 Locations

5 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region