WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00030166 Gene Name  Cbr-tax-6
Sequence Name  ? CBG08362 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable calmodulin-dependent protein phosphatase activity. Predicted to be involved in calcineurin-mediated signaling. Is an ortholog of C. elegans tax-6. In C. elegans, tax-6 is involved in several processes, including determination of adult lifespan; male mating behavior; and response to temperature stimulus. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG08362b.1 CBG08362b.1   [unknown]
Transcript:CBG08362a.1 CBG08362a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG08362a CBG08362a   [unknown]
CDS:CBG08362b CBG08362b   [unknown]

0 RNAi Result

14 Allele

Public Name
WBVar00037469
WBVar00037474
WBVar00037479
WBVar00037484
WBVar00009877
WBVar00009249
WBVar00009284
WBVar00009274
WBVar00009279
WBVar00009264
WBVar00009269
WBVar00009254
WBVar00009259
WBVar00113527

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  C.briggsae proteins that showed significantly increased at L1 larva stage than in emrbyo. Benjamin and Hochberg corrected p-value < 0.05. WBPaper00051425:CB_L1_vs_embryo_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-tax-6, AAATACGAGAACAATGTGATGAACATCCGTCAGTTCAACTGTAGTCCACATCCATACTGG, WBGene00030166   Expr1058474 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region