WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00030124 Gene Name  Cbr-cha-1
Sequence Name  ? CBG08307 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable acyltransferase activity and xenobiotic transmembrane transporter activity. Predicted to be involved in transmembrane transport and xenobiotic transport. Predicted to be located in membrane. Is an ortholog of C. elegans cha-1. In C. elegans, cha-1 is involved in acetylcholine biosynthetic process. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG08307c.1 CBG08307c.1   [unknown]
Transcript:CBG08307b.1 CBG08307b.1   [unknown]
Transcript:CBG08307a.1 CBG08307a.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG08307a CBG08307a   [unknown]
CDS:CBG08307b CBG08307b   [unknown]
CDS:CBG08307c CBG08307c   [unknown]

0 RNAi Result

32 Allele

Public Name
WBVar00113369
WBVar00113368
WBVar00113367
WBVar00113373
WBVar00113372
WBVar00113371
WBVar00113370
WBVar00113377
WBVar00113376
WBVar00113375
WBVar00113374
WBVar00113366
WBVar00113365
WBVar00113364
WBVar00113363
WBVar00113389
WBVar00113391
WBVar00113390
WBVar00113394
WBVar00113393
WBVar00113392
WBVar00113379
WBVar00113378
WBVar00113380
WBVar00113384
WBVar00113383
WBVar00113382
WBVar00113381
WBVar00113388
WBVar00113387

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-cha-1, ATCGGAGAACTGATTTGACTCATTTTAAGAAGAGTTTGGGAGATGCGATGAGAGATGTAA, WBGene00030122   Expr1062584 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG08307, CACTAATTGGGGATTCACTGCTCTTAACATCATTATCTTTATCACCAACGTTGGATATGC, WBGene00030124   Expr1068998 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

6 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in
  involved_in
  located_in

0 Homologues

0 Locations

6 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region