WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00030001 Gene Name  Cbr-mrp-1
Sequence Name  ? CBG08145 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable ABC-type transporter activity; ATP binding activity; and ATP hydrolysis activity. Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans mrp-1. In C. elegans, mrp-1 is involved in dauer larval development; regulatory ncRNA-mediated post-transcriptional gene silencing; and stress response to metal ion. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG08145a.1 CBG08145a.1   [unknown]
Transcript:CBG08145b.1 CBG08145b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG08145a CBG08145a   [unknown]
CDS:CBG08145b CBG08145b   [unknown]

0 RNAi Result

9 Allele

Public Name
WBVar00136823
WBVar00113135
WBVar00113139
WBVar00113138
WBVar00113137
WBVar00113136
WBVar00113141
WBVar00113140
WBVar00013464

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-mrp-1, TTTGTTCCGAATCATCGAGGCAGATGGCGGATGTATAGAAATTGATGGTGTGAATATAGC, WBGene00030001   Expr1050969 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

6 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  enables
  involved_in
  located_in

0 Homologues

0 Locations

6 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  enables
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region