WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00029983 Gene Name  Cbr-sli-1
Sequence Name  ? CBG08124 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable calcium ion binding activity and ubiquitin-protein transferase activity. Predicted to be involved in cell surface receptor signaling pathway and regulation of signaling. Is an ortholog of C. elegans sli-1. In C. elegans, sli-1 is involved in negative regulation of vulval development. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG08124b.1 CBG08124b.1   [unknown]
Transcript:CBG08124a.1 CBG08124a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG08124b CBG08124b   [unknown]
CDS:CBG08124a CBG08124a   [unknown]

0 RNAi Result

33 Allele

Public Name
WBVar00042029
WBVar00042024
WBVar00113102
WBVar00113101
WBVar00113100
WBVar00113072
WBVar00113076
WBVar00113075
WBVar00113074
WBVar00113073
WBVar00113079
WBVar00113078
WBVar00113077
WBVar00113090
WBVar00113094
WBVar00113093
WBVar00113092
WBVar00113091
WBVar00113098
WBVar00113097
WBVar00113096
WBVar00113095
WBVar00113099
WBVar00113083
WBVar00113082
WBVar00113081
WBVar00113080
WBVar00113087
WBVar00113086
WBVar00113085

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-sli-1, GGATGGTGGCGGAAATACGTGTCCATTCTGCCGTTATGAAATCAAAGGAACAAACCGTGT, WBGene00029983   Expr1069476 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

4 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in
  involved_in

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region