WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00029141 Gene Name  CBG06960
Sequence Name  ? CBG06960 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be involved in ubiquitin-dependent protein catabolic process. Is an ortholog of C. elegans npl-4.1 and npl-4.2. In C. elegans, npl-4.1 is involved in positive regulation of protein localization to nucleus. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG06960b.1 CBG06960b.1   [unknown]
Transcript:CBG06960a.1 CBG06960a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG06960a CBG06960a   [unknown]
CDS:CBG06960b CBG06960b   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-npl-4.1, GGGCACTGCACTTTCCAAAATGAAGCTGGAAGACAGGATTGTTCAATGTGTGGATTACCA, WBGene00029141   Expr1052858 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  involved_in

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region