WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00029037 Gene Name  Cbr-lin-12.3
Sequence Name  ? CBG06829 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be involved in cell differentiation. Predicted to be located in membrane. Is an ortholog of C. elegans lin-12. In C. elegans, lin-12 is involved in several processes, including egg-laying behavior; nematode larval development; and positive regulation of mesodermal cell fate specification. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG06829.1 CBG06829.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG06829 CBG06829   [unknown]

0 RNAi Result

7 Allele

Public Name
cbp40087
cbp40088
cbp40089
cbp40083
cbp40084
cbp40085
cbp40086

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in Cbr-spr-4(gu163) comparing to in AF16. DESeq2, FDR < 0.05. WBPaper00059178:Cbr-spr-4(gu163)_upregulated
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day1_upregulated

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG06829, CATTCAAGGACTGTCATGTTTTTGGTTCACAGTGGAGCAAGTATTGAAGCAGTCGATGCA, WBGene00029037   Expr1054404 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
Cbr-lin-12, AACTCCAATTATGTTGGCAGCTAGAGAAGGGCATTCAAGGACTGTCATGTTTTTGGTTCA, WBGene00029035   Expr1065837 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  involved_in
  located_in

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region