WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00028923 Gene Name  Cbr-frpr-5
Sequence Name  ? CBG06682 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable G protein-coupled receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Is an ortholog of C. elegans frpr-5. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG06682b.1 CBG06682b.1   [unknown]
Transcript:CBG06682a.2 CBG06682a.2   [unknown]
Transcript:CBG06682a.1 CBG06682a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG06682a CBG06682a   [unknown]
CDS:CBG06682b CBG06682b   [unknown]

0 RNAi Result

19 Allele

Public Name
WBVar00111598
WBVar00111599
WBVar00111596
WBVar00111597
WBVar00052319
WBVar00052314
WBVar00020794
WBVar00020829
WBVar00020799
WBVar00020834
WBVar00020804
WBVar00020839
WBVar00020809
WBVar00020844
WBVar00020814
WBVar00020784
WBVar00020819
WBVar00020789
WBVar00020824

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG06682, TCTCGGATACTAGCAACTTTTTAGTGGTTTTCAATTCTTCTGTCAACTGTATCATCTATT, WBGene00028923   Expr1051561 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  located_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region