WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00028908 Gene Name  Cbr-lin-40
Sequence Name  ? CBG06664 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable chromatin binding activity and sequence-specific DNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans lin-40. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG06664b.1 CBG06664b.1   [unknown]
Transcript:CBG06664a.1 CBG06664a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG06664b CBG06664b   [unknown]
CDS:CBG06664a CBG06664a   [unknown]

0 RNAi Result

13 Allele

Public Name
WBVar00111587
WBVar00111588
WBVar00111589
WBVar00111590
WBVar00111591
WBVar00111592
WBVar00052269
WBVar00052274
WBVar00020739
WBVar00020744
WBVar00020749
WBVar00020754
WBVar00020759

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  C.briggsae proteins that showed significantly decreased at L4 larva stage than in emrbyo. Benjamin and Hochberg corrected p-value < 0.05. WBPaper00051425:CB_L4_vs_embryo_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-lin-40, GCCCGTCATCCATGCGAATTCCATCAATTTCTTCAGTCATACCATGCAATAATATCTCCA, WBGene00028908   Expr1067898 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region