WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00028512 Gene Name  Cbr-unc-22
Sequence Name  ? CBG06205 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable ATP binding activity and protein kinase activity. Predicted to be involved in protein phosphorylation. Is an ortholog of C. elegans unc-22. In C. elegans, unc-22 is involved in several processes, including adult behavior; positive regulation of sarcomere organization; and positive regulation of striated muscle contraction. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

5 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG06205a.1 CBG06205a.1   [unknown]
Transcript:CBG06205b.1 CBG06205b.1   [unknown]
Transcript:CBG06205d.1 CBG06205d.1   [unknown]
Transcript:CBG06205c.1 CBG06205c.1   [unknown]
Transcript:CBG06205e.1 CBG06205e.1   [unknown]
 

Other

5 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG06205e CBG06205e   [unknown]
CDS:CBG06205b CBG06205b   [unknown]
CDS:CBG06205a CBG06205a   [unknown]
CDS:CBG06205d CBG06205d   [unknown]
CDS:CBG06205c CBG06205c   [unknown]

0 RNAi Result

19 Allele

Public Name
WBVar00006482
WBVar00006472
WBVar00006477
WBVar00006462
WBVar00006467
WBVar00006452
WBVar00006457
WBVar00110998
WBVar00111345
WBVar00111346
WBVar00111343
WBVar00111344
WBVar00111349
WBVar00111347
WBVar00111348
WBVar00111341
WBVar00111342
WBVar00111340
WBVar00111006

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-unc-22, GAAGGGAACCAACATTGTTTCTGTAGCTTCTTTGGTTGTCGTTGGAGAAAAAGCCGATCC, WBGene00028512   Expr1057409 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region